regarding transcriptome read cleaning

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regarding transcriptome read cleaning

Rahul Shelke
Dear sir,
                   I am using Australia Galaxy for assembling transcriptome lib. For cleaning of Illumina nextera 500 reads, I am using a trimmomatic program. This program contains nextera paired end adapter cleaning option. Now I am confused whether I should use galaxy nextera adapter or use specific nextera 500 adapter for cleaning. Kindly provide your suggestion.

Rahul G. Shelke
PhD Scholar
Department of Biosciences and Bioengineering.
Indian Institute Of Technology.
Guwahati,Assam, India.781039
Skype ID:- rahulshelke2

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